Index

A

arbitrary_types_allowed (glossagen.utils.pdf_utils.ResearchDoc.Config attribute)

C

create_documents_from_text_chunks() (in module glossagen.pipelines.knowledge_graph)

D

deduplicate_entries() (glossagen.pipelines.generate_glossary.GlossaryGenerator method) definition (glossagen.pipelines.generate_glossary.TerminusTechnicus attribute)

doc_src (glossagen.utils.pdf_utils.ResearchDoc attribute) doi (glossagen.utils.pdf_utils.MetadataSignature attribute)

E

extract_metadata() (glossagen.utils.pdf_utils.ResearchDoc method)

extract_text_from_latex() (in module glossagen.pipelines.latex_glossary)

F

fitz_paper (glossagen.utils.pdf_utils.ResearchDoc attribute) format_nicely() (glossagen.pipelines.generate_glossary.GlossaryGenerator method)

from_dir() (glossagen.utils.pdf_utils.ResearchDoc class method) from_text() (glossagen.utils.pdf_utils.ResearchDoc class method)

G

generate_glossary() (in module glossagen.pipelines.generate_glossary) generate_glossary_from_doc() (glossagen.pipelines.generate_glossary.GlossaryGenerator method) generate_ontology_from_glossary() (glossagen.pipelines.glossary_to_ontology.OntologyGenerator method) (in module glossagen.pipelines.glossary_to_ontology) glossagen module glossagen.cli module glossagen.pipelines module glossagen.pipelines.generate_glossary module glossagen.pipelines.glossary_to_ontology module

glossagen.pipelines.knowledge_graph module glossagen.pipelines.latex_glossary module glossagen.utils module glossagen.utils.dspy_utils module glossagen.utils.pdf_utils module glossary (glossagen.pipelines.generate_glossary.Text2GlossarySignature attribute) Glossary2Labels (class in glossagen.pipelines.glossary_to_ontology) Glossary2Relations (class in glossagen.pipelines.glossary_to_ontology) GlossaryGenerator (class in glossagen.pipelines.generate_glossary)

H

hello_world() (in module glossagen.cli)

I

important_terms (glossagen.pipelines.generate_glossary.KeepImportantTerms attribute) init_dspy() (in module glossagen.utils.dspy_utils)

input_text (glossagen.pipelines.glossary_to_ontology.Glossary2Labels attribute) (glossagen.pipelines.glossary_to_ontology.Glossary2Relations attribute)

K

KeepImportantTerms (class in glossagen.pipelines.generate_glossary)

L

label (glossagen.pipelines.glossary_to_ontology.OntologyEntityLabels attribute) labels (glossagen.pipelines.glossary_to_ontology.Glossary2Labels attribute) (glossagen.pipelines.glossary_to_ontology.Ontology attribute)

load() (glossagen.utils.pdf_utils.ResearchDocLoader method) log_to_wandb() (in module glossagen.pipelines.generate_glossary)

M

main() (in module glossagen.cli) (in module glossagen.pipelines.generate_glossary) (in module glossagen.pipelines.knowledge_graph) (in module glossagen.pipelines.latex_glossary) (in module glossagen.utils.pdf_utils) metadata_dict (glossagen.utils.pdf_utils.ResearchDoc attribute) MetadataSignature (class in glossagen.utils.pdf_utils) model_computed_fields (glossagen.pipelines.generate_glossary.KeepImportantTerms attribute) (glossagen.pipelines.generate_glossary.TerminusTechnicus attribute) (glossagen.pipelines.generate_glossary.Text2GlossarySignature attribute) (glossagen.pipelines.glossary_to_ontology.Glossary2Labels attribute) (glossagen.pipelines.glossary_to_ontology.Glossary2Relations attribute) (glossagen.pipelines.glossary_to_ontology.Ontology attribute) (glossagen.pipelines.glossary_to_ontology.OntologyEntityLabels attribute) (glossagen.pipelines.glossary_to_ontology.OntologyRelation attribute) (glossagen.utils.pdf_utils.MetadataSignature attribute) (glossagen.utils.pdf_utils.ResearchDoc attribute) model_config (glossagen.pipelines.generate_glossary.KeepImportantTerms attribute) (glossagen.pipelines.generate_glossary.TerminusTechnicus attribute) (glossagen.pipelines.generate_glossary.Text2GlossarySignature attribute) (glossagen.pipelines.glossary_to_ontology.Glossary2Labels attribute) (glossagen.pipelines.glossary_to_ontology.Glossary2Relations attribute) (glossagen.pipelines.glossary_to_ontology.Ontology attribute) (glossagen.pipelines.glossary_to_ontology.OntologyEntityLabels attribute) (glossagen.pipelines.glossary_to_ontology.OntologyRelation attribute) (glossagen.utils.pdf_utils.MetadataSignature attribute) (glossagen.utils.pdf_utils.ResearchDoc attribute)

model_fields (glossagen.pipelines.generate_glossary.KeepImportantTerms attribute) (glossagen.pipelines.generate_glossary.TerminusTechnicus attribute) (glossagen.pipelines.generate_glossary.Text2GlossarySignature attribute) (glossagen.pipelines.glossary_to_ontology.Glossary2Labels attribute) (glossagen.pipelines.glossary_to_ontology.Glossary2Relations attribute) (glossagen.pipelines.glossary_to_ontology.Ontology attribute) (glossagen.pipelines.glossary_to_ontology.OntologyEntityLabels attribute) (glossagen.pipelines.glossary_to_ontology.OntologyRelation attribute) (glossagen.utils.pdf_utils.MetadataSignature attribute) (glossagen.utils.pdf_utils.ResearchDoc attribute) module glossagen glossagen.cli glossagen.pipelines glossagen.pipelines.generate_glossary glossagen.pipelines.glossary_to_ontology glossagen.pipelines.knowledge_graph glossagen.pipelines.latex_glossary glossagen.utils glossagen.utils.dspy_utils glossagen.utils.pdf_utils

N

normalize_term() (glossagen.pipelines.generate_glossary.GlossaryGenerator method)

O

Ontology (class in glossagen.pipelines.glossary_to_ontology) OntologyEntityLabels (class in glossagen.pipelines.glossary_to_ontology)

OntologyGenerator (class in glossagen.pipelines.glossary_to_ontology) OntologyRelation (class in glossagen.pipelines.glossary_to_ontology)

P

paper (glossagen.utils.pdf_utils.ResearchDoc attribute) print_labels() (glossagen.pipelines.glossary_to_ontology.Ontology method)

print_relationships() (glossagen.pipelines.glossary_to_ontology.Ontology method) publication_text (glossagen.utils.pdf_utils.MetadataSignature attribute)

R

relation (glossagen.pipelines.glossary_to_ontology.OntologyRelation attribute) relations (glossagen.pipelines.glossary_to_ontology.Glossary2Relations attribute) relationships (glossagen.pipelines.glossary_to_ontology.Ontology attribute)

ResearchDoc (class in glossagen.utils.pdf_utils) ResearchDoc.Config (class in glossagen.utils.pdf_utils) ResearchDocLoader (class in glossagen.utils.pdf_utils)

T

term (glossagen.pipelines.generate_glossary.TerminusTechnicus attribute) termini_technici (glossagen.pipelines.generate_glossary.KeepImportantTerms attribute) TerminusTechnicus (class in glossagen.pipelines.generate_glossary)

text (glossagen.pipelines.generate_glossary.Text2GlossarySignature attribute) Text2GlossarySignature (class in glossagen.pipelines.generate_glossary) title (glossagen.utils.pdf_utils.MetadataSignature attribute) trim_at_references() (glossagen.utils.pdf_utils.ResearchDoc method)